Mercurial > repos > elixir-it > mutect2

diff mv_untar_gatk.sh @ 11:057bce4b4f93 draft default tip

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Uploaded
author elixir-it
date Wed, 02 Oct 2019 04:39:04 -0400
parents e3662508ee26
children
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--- a/mv_untar_gatk.sh	Sun Sep 22 16:31:11 2019 -0400
+++ b/mv_untar_gatk.sh	Wed Oct 02 04:39:04 2019 -0400
@@ -1,7 +1,7 @@
 #!/bin/bash
 #if the .jar file is not present in the conda_prefix the script search the tar.gz in the conda_prefix of the vm
 #and untar the archive
-if [[ ! -f $CONDA_PREFIX/../../GenomeAnalysisTK.jar ]] ; then
+if [ ! -f $CONDA_PREFIX/../../GenomeAnalysisTK.jar ] ; then
         tar -jxvf $CONDA_PREFIX/../../GenomeAnalysis*.tar.bz2 --strip-components=1 -C $CONDA_PREFIX/../../ 2> log_tar
 
 else