comparison test-data/sump_results.vcf @ 0:c4f5e1994690 draft

Uploaded

0:c4f5e1994690

##fileformat=VCFv4.1
##FILTER=<ID=PASS,Description="Accept as a confident somatic mutation">
##FILTER=<ID=Tier1,Description="Confident level 1">
##FILTER=<ID=Tier2,Description="Confident level 2">
##FILTER=<ID=Tier3,Description="Confident level 3">
##FILTER=<ID=Tier4,Description="Confident level 4">
##FILTER=<ID=Tier5,Description="Confident level 5">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read depth at this position in the sample">
##FORMAT=<ID=AD,Number=.,Type=Integer,Description="Depth of reads supporting alleles 0/1/2/3...">
##FORMAT=<ID=BQ,Number=.,Type=Integer,Description="Average base quality for reads supporting alleles">
##FORMAT=<ID=SS,Number=1,Type=Integer,Description="Variant status relative to non-adjacent Normal,0=wildtype,1=germline,2=somatic,3=LOH,4=post-transcriptional modification,5=unknown">
##INFO=<ID=SOMATIC,Number=0,Type=Flag,Description="Indicates if record is a somatic mutation">
##TUMOR="Sample=tumor,File=/export/galaxy/database/files/000/dataset_533.dat"
##NORMAL="Sample=normal,File=/export/galaxy/database/files/000/dataset_532.dat"
##MuSE_version="v1.0rc Build Date Feb 11 2018 Build Time 12:25:59"
##MuSE_call_1="call -O variant_call -f /export/galaxy/database/files/000/dataset_552.dat /export/galaxy/database/files/000/dataset_533.dat /export/galaxy/database/files/000/dataset_532.dat"
##MuSE_sump="sump -O prova -E -I /tmp/tmpbAAnUG/files/000/dataset_1.dat -D dbsnp.vcf.gz"
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chr22	22714411	.	T	C	.	PASS	SOMATIC	GT:DP:AD:BQ:SS	0/1:28:22,6:31,32:2	0/0:9:9,0:30,0:.