Mercurial > repos > elixir-it > covacs_variant_recalibrator

diff tool_data_table_conf.xml.sample @ 4:91abc25944cf draft

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author elixir-it
date Fri, 09 Nov 2018 06:53:04 -0500
parents 3d969c748317
children
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_data_table_conf.xml.sample	Fri Nov 09 06:53:04 2018 -0500
@@ -0,0 +1,17 @@
+<tables>
+ <!-- Location of bed-file for covacs -->
+    <table name="covacs_bed" comment_char="#">
+        <columns> value, dbkey, name, path</columns>
+        <file path="tool-data/covacs_bed.loc" />
+    </table>
+<!-- Location of index file  for covacs gatk wrapper -->
+    <table name="covacs_gatk_indexes" comment_char="#">
+        <columns> value, dbkey, name, path</columns>
+        <file path="tool-data/covacs_gatk_indexes.loc" />
+    </table>
+<!-- Location of vcf-file for covacs VariantRecalibrator -->
+    <table name="covacs_vcf" comment_char="#">
+        <columns> value, name, path</columns>
+        <file path="tool-data/covacs_vcf.loc" />
+    </table>
+</tables>