Mercurial > repos > elixir-it > covacs_select_filtration

diff mv_untar_gatk.sh @ 2:5058867ac48f draft default tip

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author elixir-it
date Wed, 02 Oct 2019 04:31:08 -0400
parents 3a37867409fe
children
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--- a/mv_untar_gatk.sh	Thu Nov 15 15:57:12 2018 -0500
+++ b/mv_untar_gatk.sh	Wed Oct 02 04:31:08 2019 -0400
@@ -1,7 +1,7 @@
 #!/bin/bash
 #if the .jar file is not present in the conda_prefix the script search the tar.gz in the conda_prefix of the vm
 #and untar the archive
-if [[ ! -f $CONDA_PREFIX/../../GenomeAnalysisTK.jar ]] ; then
+if [ ! -f $CONDA_PREFIX/../../GenomeAnalysisTK.jar ] ; then
         tar -jxvf $CONDA_PREFIX/../../GenomeAnalysis*.tar.bz2 --strip-components=1 -C $CONDA_PREFIX/../../ 2> log_tar
 
 else