Mercurial > repos > elixir-it > corgat_multifc
comparison multifasta/align.pl @ 1:2a5485758ae7 draft default tip
Uploaded
| author | elixir-it |
|---|---|
| date | Tue, 16 Feb 2021 09:26:30 +0000 |
| parents | 3f6d4e4340e8 |
| children |
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| 0:3f6d4e4340e8 | 1:2a5485758ae7 |
|---|---|
| 165 if ($_=~/^>(.*)/) | 165 if ($_=~/^>(.*)/) |
| 166 { | 166 { |
| 167 my $id=$1; | 167 my $id=$1; |
| 168 $id=(split(/\s+/,$id))[0]; | 168 $id=(split(/\s+/,$id))[0]; |
| 169 $id=~s/\-//g; | 169 $id=~s/\-//g; |
| 170 if ($id=~/\|/) | |
| 171 { | |
| 172 $id=(split(/\|/,$id))[1]; | |
| 173 } | |
| 174 $id=~s/\//\_/g; | |
| 170 open(OUT,">$tgdir/$id.fasta"); | 175 open(OUT,">$tgdir/$id.fasta"); |
| 171 print OUT ">$id\n"; | 176 print OUT ">$id\n"; |
| 172 push(@list_files,"$tgdir/$id.fasta"); | 177 push(@list_files,"$tgdir/$id.fasta"); |
| 173 }else{ | 178 }else{ |
| 174 chomp(); | 179 chomp(); |
