Mercurial > repos > elixir-it > corgat_funann

diff FunAnn/annotate.pl @ 1:9b8afa0b6da4 draft

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Uploaded
author elixir-it
date Tue, 27 Oct 2020 14:43:15 +0000
parents 1886293c2243
children
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line diff
--- a/FunAnn/annotate.pl	Thu Jul 23 12:49:09 2020 +0000
+++ b/FunAnn/annotate.pl	Tue Oct 27 14:43:15 2020 +0000
@@ -7,9 +7,6 @@
    system("gzip -d GCF_009858895.2_ASM985889v3_genomic.fna.gz");
 }
 
-
-
-
 $gen_code="genetic_code";
 die("need genetic code file in the current folder\n") unless -e "genetic_code";
 open(IN,$gen_code);
@@ -19,8 +16,8 @@
 	$code{$triplet}=$oneL;
 }
 
-$genome="GCF_009858895.2_ASM985889v3_genomic.fna";
-die("need reference genome file in the current folder\n") unless -e "GCF_009858895.2_ASM985889v3_genomic.fna";
+$genome="GCA_009858895.3_ASM985889v3_genomic.fna";
+die("need reference genome file in the current folder\n") unless -e "GCA_009858895.3_ASM985889v3_genomic.fna";
 open(IN,$genome);
 while(<IN>)
 {