diff bubble/bubble.xml @ 0:db556c94a101 draft default tip

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/bubble/bubble.xml	Tue Oct 27 14:48:56 2020 +0000
@@ -0,0 +1,27 @@
+<tool id="BubblePlot" name="Bubbleplot" version="1">
+  <description> </description>
+  <requirements>
+    <requirement type="package" >perl</requirement>
+    <requirement type="package" >r-base</requirement>
+  </requirements>
+  <command> <![CDATA[
+	ln -s $__tool_directory__/bubbleplot.R 2>$log &&
+	ln -s $__tool_directory__/MatData.csv 2>>$log &&
+	ln -s $__tool_directory__/VirData.csv 2>>$log &&
+        perl $__tool_directory__/plotMdata.pl $outfile_tabular $plot1 $plot2 ${" ".join(map(str, $input_file))} 2>>$log
+          ]]>
+  </command>
+  <inputs>
+	<param name="input_file" format="txt" type="data" multiple="true" label="show-snps tabular ouput" help="Clustering of SARS-CoV-2 isolates based on high-freq alleles" />
+  </inputs>
+  <outputs>
+	<data format="txt" name="outfile_tabular" label="AF prevalence in SARS-CoV-2 types, as defined in Chiara et tabular format " />
+	<data format="pdf" name="plot1" label="Bubbleplot " />
+	<data format="pdf" name="plot2" label="Heatmap " />
+	<data format="txt" name="log" label="${tool.name} on ${on_string}: log file "/>
+  </outputs>
+  <help>
+  </help>
+  <citations>
+  </citations>
+</tool>