Mercurial > repos > edward-kirton > abyss_toolsuite

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Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
author edward-kirton
date Tue, 07 Jun 2011 17:21:54 -0400
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f955d9559654 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
edward-kirton
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1 #!/bin/bash
f955d9559654 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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2
f955d9559654 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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3 if [ $# -ne 3 ]
f955d9559654 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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4 then
f955d9559654 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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5 echo "ERROR: Expected exactly 3 arguments; got: $*" 1>&2
f955d9559654 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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6 exit 1
f955d9559654 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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7 fi
f955d9559654 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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8
f955d9559654 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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9 CMD=`ABYSS -k$1 $2 -o $3 2>&1`
f955d9559654 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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10 if [ $? -ne 0 ]
f955d9559654 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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11 then
f955d9559654 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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12 {
f955d9559654 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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13 echo "COMMAND FAILURE: $CMD" 1>&2
f955d9559654 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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14 exit $?
f955d9559654 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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15 }
f955d9559654 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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16 fi