view trinotateviz.xml @ 0:c03cf513baf3 draft default tip

planemo upload commit af9b813e424144b8bd7d9b9ce6e3a3c93bc9f549-dirty

<tool id="trinotateviz" name="trinotate Viz" version="1.0">
    <description>Grid visualization for Trinotate SQLite DB</description>
    <requirements>
    </requirements>
    <stdio>
        <exit_code range="1:" />
    </stdio>
    <command><![CDATA[
        sed "s@input_db@${__app__.security.encode_id($db.id)}@" $__tool_directory__/static/trinotateviz.html > $output;
        mkdir ${output.files_path};
        cp $__tool_directory__/static/js/app.js ${output.files_path};
        cp $__tool_directory__/static/css/main.css ${output.files_path}
    ]]></command>
    <inputs>
        <param name="db" type="data" format="sqlite" />
    </inputs>
    <outputs>
        <data name="output" format="html" />
    </outputs>

    <tests>
      <test>
          <param name="db"  value="Trinotate_no_uniprot.sqlite" />
    <output name="output" file="trinotateviz.html" lines_diff="2" />
  </test>
    </tests>
    <help><![CDATA[
        Displays a searchable grid for Trinotate SQLilte DB
    ]]></help>
    <citations>
          <citation type="bibtex">
  @misc{renameTODO,
    author = {LastTODO, FirstTODO},
    year = {TODO},
    title = {TODO},
    url = {https://trinotate.github.io/},}</citation>
</citations>
</tool>