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author eduardo
date Mon, 01 May 2017 14:56:39 -0400
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1 <tool id="trinotateviz" name="trinotate Viz" version="1.0">
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2 <description>Grid visualization for Trinotate SQLite DB</description>
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3 <requirements>
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4 </requirements>
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5 <stdio>
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6 <exit_code range="1:" />
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7 </stdio>
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8 <command><![CDATA[
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9 sed "s@input_db@${__app__.security.encode_id($db.id)}@" $__tool_directory__/static/trinotateviz.html > $output;
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10 mkdir ${output.files_path};
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11 cp $__tool_directory__/static/js/app.js ${output.files_path};
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12 cp $__tool_directory__/static/css/main.css ${output.files_path}
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13 ]]></command>
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14 <inputs>
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15 <param name="db" type="data" format="sqlite" />
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16 </inputs>
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17 <outputs>
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18 <data name="output" format="html" />
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19 </outputs>
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20
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21 <tests>
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22 <test>
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23 <param name="db" value="Trinotate_no_uniprot.sqlite" />
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24 <output name="output" file="trinotateviz.html" lines_diff="2" />
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25 </test>
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26 </tests>
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27 <help><![CDATA[
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28 Displays a searchable grid for Trinotate SQLilte DB
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29 ]]></help>
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30 <citations>
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31 <citation type="bibtex">
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32 @misc{renameTODO,
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33 author = {LastTODO, FirstTODO},
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34 year = {TODO},
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35 title = {TODO},
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36 url = {https://trinotate.github.io/},}</citation>
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37 </citations>
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38 </tool>