Mercurial > repos > eduardo > predsi
comparison PredSi.xml @ 3:640b18ca4e64 draft
planemo upload
| author | eduardo |
|---|---|
| date | Fri, 30 Sep 2016 10:44:40 -0400 |
| parents | 0bbdcdd339ec |
| children | dda118a96cb0 |
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| 2:0bbdcdd339ec | 3:640b18ca4e64 |
|---|---|
| 3 </requirements> | 3 </requirements> |
| 4 <stdio> | 4 <stdio> |
| 5 <exit_code range="1:" /> | 5 <exit_code range="1:" /> |
| 6 </stdio> | 6 </stdio> |
| 7 <command><![CDATA[ | 7 <command><![CDATA[ |
| 8 _JAVA_OPTIONS=\${_JAVA_OPTIONS:-'-Xmx2048m -Xms256m'} && | |
| 9 export _JAVA_OPTIONS && | |
| 8 java -jar $__tool_directory__/JSPP.jar $__tool_directory__/tool-data/eukarya.smx $input1 $output1 | 10 java -jar $__tool_directory__/JSPP.jar $__tool_directory__/tool-data/eukarya.smx $input1 $output1 |
| 9 ]]></command> | 11 ]]></command> |
| 10 <inputs> | 12 <inputs> |
| 11 <param type="data" name="input1" format="fasta" label="Sequence Fasta"/> | 13 <param type="data" name="input1" format="fasta" label="Sequence Fasta"/> |
| 12 </inputs> | 14 </inputs> |