comparison meme_chip_wrapper.xml @ 7:1ed33876e25d draft

planemo upload

6:06d129dd3b5e

        <requirement type="package" version="2.6">perl_module_HTML_Template</requirement>
    </requirements>
    <description></description>
    <version_command>echo "MEME version r4.10.0"</version_command>
    <command> meme-chip $input_file -o ${memechip_out.files_path}
        #for p in str.split($motif_dbs.fields.path,","):
            -db $p
        #end for

        #if str( $options_type.options_type_selector ) == 'advanced':
            #if str( $options_type.bg_type.bg_type_selector) == 'bg_user':
                -bfile "${ str( $options_type.bg_type.bfile ) }"
            #end if

7:1ed33876e25d

        <requirement type="package" version="2.6">perl_module_HTML_Template</requirement>
    </requirements>
    <description></description>
    <version_command>echo "MEME version r4.10.0"</version_command>
    <command> meme-chip $input_file -o ${memechip_out.files_path}
        -db $__tool_directory__/JASPAR_CORE_2016.memep
        #if str( $options_type.options_type_selector ) == 'advanced':
            #if str( $options_type.bg_type.bg_type_selector) == 'bg_user':
                -bfile "${ str( $options_type.bg_type.bfile ) }"
            #end if