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comparison download_align.xml @ 24:68993fd820cb

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bowtie 2.2.5
author Eduardo <eduardoalves@abdn.ac.uk>
date Tue, 04 Aug 2015 13:54:02 +0100
parents 92b1945d1f64
children 8f36fc727988
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23:0bef3e97ff79 24:68993fd820cb
1 <tool id="download_align" name="Download and align" version="0.0.1"> 1 <tool id="download_align" name="Download and align" version="0.0.1">
2 <description> Downloads fastq.gz, unzips, trims with cutadapt and alignes to reference</description> 2 <description> Downloads fastq.gz, unzips, trims with cutadapt and alignes to reference</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.8">cutadapt</requirement> 4 <requirement type="package" version="1.8">cutadapt</requirement>
5 <requirement type="package" version="2.2.4">bowtie2</requirement> 5 <requirement type="package" version="2.2.5">bowtie2</requirement>
6 <requirement type="package" version="0.1.18">samtools</requirement> 6 <requirement type="package" version="0.1.18">samtools</requirement>
7 </requirements> 7 </requirements>
8 <command> 8 <command>
9 #set index_path = '' 9 #set index_path = ''
10 #if str($reference_genome.source) == "history": 10 #if str($reference_genome.source) == "history":