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view tool_dependencies.xml @ 5:dfa4f03b5baa

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added <requirement type="set_environment">
author Eduardo <eduardoalves@abdn.ac.uk>
date Wed, 25 Nov 2015 13:54:48 +0000
parents f35d462f57b9
children adebc1bb3961
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<?xml version="1.0"?>
<tool_dependency>
  <package name="ggplot2" version="0.9.3" >
      <repository name="package_r_ggplot2_0_9_3" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="07de191649b4"/>
    </package>
    <package name="samtools" version="0.1.19">
      <repository name="package_samtools_0_1_19" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="96aab723499f"/>
    </package>

       <set_environment version="0.0.1">
        <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>   
        <environment_variable name="TAXDUMP" action="set_to">$INSTALL_DIR/tool_data/</environment_variable>

    </set_environment>
</tool_dependency>