Mercurial > repos > eduardo > blobplot

diff blobplot.xml @ 5:dfa4f03b5baa

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added <requirement type="set_environment">
author Eduardo <eduardoalves@abdn.ac.uk>
date Wed, 25 Nov 2015 13:54:48 +0000
parents 0101d7d1211f
children
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line diff
--- a/blobplot.xml	Wed Nov 25 13:39:32 2015 +0000
+++ b/blobplot.xml	Wed Nov 25 13:54:48 2015 +0000
@@ -3,7 +3,7 @@
   <requirements>
       <requirement type="package" version="0.9.3">r_ggplot2</requirement>
       <requirement type="package" version="0.1.19">samtools</requirement>
-
+      <requirement type="set_environment">TAXDUMP</requirement>
   </requirements>
   <command>
   cut -f1,13 $blast_res | perl gc_cov_annotate.pl --blasttaxid -  --assembly $coding_seq --taxdump $TAXDUMP --bam $bam_file --out  blob_file  &amp;&amp;