Mercurial > repos > eduardo > annotateviz

diff test-data/bam/test.xml @ 0:7537482eed36 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 9bbaa3eacc76ff3bf2b6da313cc0d85705f15dd1-dirty
author eduardo
date Sat, 17 Jun 2017 13:31:06 -0400
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/bam/test.xml	Sat Jun 17 13:31:06 2017 -0400
@@ -0,0 +1,37 @@
+<?xml version="1.0"?>
+<root>
+    <metadata>
+        <gencode>11</gencode>
+        <genomes>
+            <genome>test-data/merlin.fa</genome>
+        </genomes>
+    </metadata>
+    <tracks>
+        <track cat="Default" format="pileup">
+            <files>
+                <trackFile path="test-data/bam/154.bam" ext="bam" label="Basic"/>
+            </files>
+            <options>
+                <pileup>
+                    <auto_snp>false</auto_snp>
+                    <bam_indices>
+                        <bam_index>test-data/bam/154.bam.bai</bam_index>
+                    </bam_indices>
+                </pileup>
+            </options>
+        </track>
+        <track cat="Default" format="pileup">
+            <files>
+                <trackFile path="test-data/bam/154.bam" ext="bam" label="Auto-SNP"/>
+            </files>
+            <options>
+                <pileup>
+                    <auto_snp>true</auto_snp>
+                    <bam_indices>
+                        <bam_index>test-data/bam/154.bam.bai</bam_index>
+                    </bam_indices>
+                </pileup>
+            </options>
+        </track>
+    </tracks>
+</root>