diff annotateviz.py @ 3:3302f18f9e16 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 9bbaa3eacc76ff3bf2b6da313cc0d85705f15dd1-dirty

--- a/annotateviz.py	Sat Jun 17 14:43:40 2017 -0400
+++ b/annotateviz.py	Sat Jun 17 15:10:53 2017 -0400
@@ -19,6 +19,7 @@
         parser = argparse.ArgumentParser(formatter_class=argparse.RawDescriptionHelpFormatter, description=__doc__)
         parser.add_argument('-d','--database', help="gffutils sqlite database")
         parser.add_argument('-j','--json', help="report in json format")
+        args = parser.parse_args(argv)
         gffutils.constants.always_return_list = False
         db = gffutils.interface.FeatureDB(args.database)
         prediction_list = []
@@ -28,3 +29,5 @@
         add_matches(db.features_of_type("PFAM"), prediction_list)
         fout=open(args.json, 'w')
         json.dump(prediction_list,fout)
+if __name__ == "__main__":
+        main(sys.argv[1:],sys.stdout)