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comparison annotateviz.xml @ 5:9cc97d18dff1 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 230f5fe14cc469e56626201a5c377686976d81fc-dirty
author eduardo
date Sat, 24 Jun 2017 15:49:54 -0400
parents 92921dfea0b5
children 9a09f7072ed5
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4:92921dfea0b5 5:9cc97d18dff1
15 $trackxml && 15 $trackxml &&
16 ## $output.files_path/index.html $output; 16 ## $output.files_path/index.html $output;
17 python $__tool_directory__/annotateviz.py -d $db -j ${output.files_path}/trans.json -p ${output.files_path}/gff.json && 17 python $__tool_directory__/annotateviz.py -d $db -j ${output.files_path}/trans.json -p ${output.files_path}/gff.json &&
18 sed "s@input_db@${__app__.security.encode_id($db.id)}@" $__tool_directory__/static/trinotateviz.html > $output && 18 sed "s@input_db@${__app__.security.encode_id($db.id)}@" $__tool_directory__/static/trinotateviz.html > $output &&
19 cp $__tool_directory__/static/js/gff_app.js ${output.files_path} && 19 cp $__tool_directory__/static/js/gff_app.js ${output.files_path} &&
20 cp $__tool_directory__/static/js/edit.js ${output.files_path} && 20 cp $__tool_directory__/static/js/editgff.js ${output.files_path} &&
21 cp $__tool_directory__/static/css/main.css ${output.files_path}; 21 cp $__tool_directory__/static/css/main.css ${output.files_path};
22 ]]></command> 22 ]]></command>
23 <configfiles> 23 <configfiles>
24 <configfile name="trackxml"><![CDATA[<?xml version="1.0"?> 24 <configfile name="trackxml"><![CDATA[<?xml version="1.0"?>
25 <root> 25 <root>