Mercurial > repos > eduardo > annotateviz
comparison test-data/index.html @ 0:7537482eed36 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 9bbaa3eacc76ff3bf2b6da313cc0d85705f15dd1-dirty
| author | eduardo |
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| date | Sat, 17 Jun 2017 13:31:06 -0400 |
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| children |
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| -1:000000000000 | 0:7537482eed36 |
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| 1 <!DOCTYPE html> | |
| 2 <html> | |
| 3 <head> | |
| 4 <meta http-equiv="Content-Type" content="text/html; charset=utf-8"> | |
| 5 <title>JBrowse</title> | |
| 6 <link rel="stylesheet" type="text/css" href="css/genome.css"> | |
| 7 </head> | |
| 8 <body> | |
| 9 | |
| 10 <script type="text/javascript"> | |
| 11 // jshint unused: false | |
| 12 var dojoConfig = { | |
| 13 async: true, | |
| 14 baseUrl: './src', | |
| 15 has: { | |
| 16 'host-node': false // Prevent dojo from being fooled by Electron | |
| 17 } | |
| 18 }; | |
| 19 // Move Electron's require out before loading Dojo | |
| 20 if(window.process&&process.versions&&process.versions.electron) { | |
| 21 window.electronRequire = require; | |
| 22 delete window.require; | |
| 23 } | |
| 24 </script> | |
| 25 <script type="text/javascript" src="src/dojo/dojo.js"></script> | |
| 26 <script type="text/javascript" src="src/JBrowse/init.js"></script> | |
| 27 <script type="text/javascript"> | |
| 28 window.onerror=function(msg){ | |
| 29 if( document.body ) | |
| 30 document.body.setAttribute("JSError",msg); | |
| 31 } | |
| 32 | |
| 33 // puts the main Browser object in this for convenience. feel | |
| 34 // free to move it into function scope if you want to keep it | |
| 35 // out of the global namespace | |
| 36 var JBrowse; | |
| 37 require(['JBrowse/Browser', 'dojo/io-query', 'dojo/json' ], | |
| 38 function (Browser,ioQuery,JSON) { | |
| 39 // the initial configuration of this JBrowse | |
| 40 // instance | |
| 41 | |
| 42 // NOTE: this initial config is the same as any | |
| 43 // other JBrowse config in any other file. this | |
| 44 // one just sets defaults from URL query params. | |
| 45 // If you are embedding JBrowse in some other app, | |
| 46 // you might as well just set this initial config | |
| 47 // to something like { include: '../my/dynamic/conf.json' }, | |
| 48 // or you could put the entire | |
| 49 // dynamically-generated JBrowse config here. | |
| 50 | |
| 51 // parse the query vars in the page URL | |
| 52 var queryParams = ioQuery.queryToObject( window.location.search.slice(1) ); | |
| 53 | |
| 54 var config = { | |
| 55 containerID: "GenomeBrowser", | |
| 56 | |
| 57 dataRoot: queryParams.data, | |
| 58 queryParams: queryParams, | |
| 59 location: queryParams.loc, | |
| 60 forceTracks: queryParams.tracks, | |
| 61 initialHighlight: queryParams.highlight, | |
| 62 show_nav: queryParams.nav, | |
| 63 show_tracklist: queryParams.tracklist, | |
| 64 show_overview: queryParams.overview, | |
| 65 show_menu: queryParams.menu, | |
| 66 show_tracklabels: queryParams.tracklabels, | |
| 67 highResolutionMode: queryParams.highres, | |
| 68 stores: { url: { type: "JBrowse/Store/SeqFeature/FromConfig", features: [] } }, | |
| 69 makeFullViewURL: function( browser ) { | |
| 70 | |
| 71 // the URL for the 'Full view' link | |
| 72 // in embedded mode should be the current | |
| 73 // view URL, except with 'nav', 'tracklist', | |
| 74 // and 'overview' parameters forced to 1. | |
| 75 | |
| 76 return browser.makeCurrentViewURL({ nav: 1, tracklist: 1, overview: 1 }); | |
| 77 }, | |
| 78 updateBrowserURL: true | |
| 79 }; | |
| 80 | |
| 81 //if there is ?addFeatures in the query params, | |
| 82 //define a store for data from the URL | |
| 83 if( queryParams.addFeatures ) { | |
| 84 config.stores.url.features = JSON.parse( queryParams.addFeatures ); | |
| 85 } | |
| 86 | |
| 87 // if there is ?addTracks in the query params, add | |
| 88 // those track configurations to our initial | |
| 89 // configuration | |
| 90 if( queryParams.addTracks ) { | |
| 91 config.tracks = JSON.parse( queryParams.addTracks ); | |
| 92 } | |
| 93 | |
| 94 // if there is ?addStores in the query params, add | |
| 95 // those store configurations to our initial | |
| 96 // configuration | |
| 97 if( queryParams.addStores ) { | |
| 98 config.stores = JSON.parse( queryParams.addStores ); | |
| 99 } | |
| 100 | |
| 101 // create a JBrowse global variable holding the JBrowse instance | |
| 102 JBrowse = new Browser( config ); | |
| 103 }); | |
| 104 </script> | |
| 105 | |
| 106 </head> | |
| 107 | |
| 108 <body> | |
| 109 <div id="GenomeBrowser" style="height: 100%; width: 100%; padding: 0; border: 0;"></div> | |
| 110 <div style="display: none">JBrowseDefaultMainPage</div> | |
| 111 </body> | |
| 112 </html> |