Mercurial > repos > eduardo > annotateviz

comparison static/trinotateviz.html @ 0:7537482eed36 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 9bbaa3eacc76ff3bf2b6da313cc0d85705f15dd1-dirty
author eduardo
date Sat, 17 Jun 2017 13:31:06 -0400
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children 31e855c95936
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-1:000000000000 0:7537482eed36
1 <!doctype html>
2 <html ng-app="app">
3 <head>
4 <script src="http://ajax.googleapis.com/ajax/libs/angularjs/1.4.3/angular.js"></script>
5 <script src="http://ajax.googleapis.com/ajax/libs/angularjs/1.4.3/angular-touch.js"></script>
6 <script src="http://ajax.googleapis.com/ajax/libs/angularjs/1.4.3/angular-animate.js"></script>
7 <script src="http://ui-grid.info/docs/grunt-scripts/csv.js"></script>
8 <script src="http://ui-grid.info/docs/grunt-scripts/pdfmake.js"></script>
9 <script src="http://ui-grid.info/docs/grunt-scripts/vfs_fonts.js"></script>
10 <script src="https://cdn.rawgit.com/angular-ui/bower-ui-grid/master/ui-grid.min.js"></script>
11 <link rel="stylesheet" href="https://cdn.rawgit.com/angular-ui/bower-ui-grid/master/ui-grid.min.css" type="text/css">
12 <link rel="stylesheet" href="main.css" type="text/css">
13 <link rel="stylesheet" type="text/css" href="css/genome.css">
14 </head>
15 <body>
16
17 <div ng-controller="MainCtrl">
18
19 <div ui-grid="gridOptions" ui-grid-pagination ui-grid-grouping ui-grid-exporter class="grid"></div>
20 </div>
21
22 <div id="GenomeBrowser" style="height: 100%; width: 100%; padding: 0; border: 0;"></div>
23 <div style="display: none">JBrowseDefaultMainPage</div>
24
25
26 <script type="text/javascript">
27 <script type="text/javascript">
28 // jshint unused: false
29 var dojoConfig = {
30 async: true,
31 baseUrl: './src',
32 has: {
33 'host-node': false // Prevent dojo from being fooled by Electron
34 }
35 };
36 // Move Electron's require out before loading Dojo
37 if(window.process&&process.versions&&process.versions.electron) {
38 window.electronRequire = require;
39 delete window.require;
40 }
41 </script>
42 <script type="text/javascript" src="src/dojo/dojo.js"></script>
43 <script type="text/javascript" src="src/JBrowse/init.js"></script>
44 <script type="text/javascript">
45 var hdaId = 'input_db' //for source for grid data
46 window.onerror=function(msg){
47 if( document.body )
48 document.body.setAttribute("JSError",msg);
49 }
50
51 // puts the main Browser object in this for convenience. feel
52 // free to move it into function scope if you want to keep it
53 // out of the global namespace
54 var JBrowse;
55 require(['JBrowse/Browser', 'dojo/io-query', 'dojo/json' ],
56 function (Browser,ioQuery,JSON) {
57 // the initial configuration of this JBrowse
58 // instance
59
60 // NOTE: this initial config is the same as any
61 // other JBrowse config in any other file. this
62 // one just sets defaults from URL query params.
63 // If you are embedding JBrowse in some other app,
64 // you might as well just set this initial config
65 // to something like { include: '../my/dynamic/conf.json' },
66 // or you could put the entire
67 // dynamically-generated JBrowse config here.
68
69 // parse the query vars in the page URL
70 var queryParams = ioQuery.queryToObject( window.location.search.slice(1) );
71
72 var config = {
73 containerID: "GenomeBrowser",
74
75 dataRoot: queryParams.data,
76 queryParams: queryParams,
77 location: queryParams.loc,
78 forceTracks: queryParams.tracks,
79 initialHighlight: queryParams.highlight,
80 show_nav: queryParams.nav,
81 show_tracklist: queryParams.tracklist,
82 show_overview: queryParams.overview,
83 show_menu: queryParams.menu,
84 show_tracklabels: queryParams.tracklabels,
85 highResolutionMode: queryParams.highres,
86 stores: { url: { type: "JBrowse/Store/SeqFeature/FromConfig", features: [] } },
87 makeFullViewURL: function( browser ) {
88
89 // the URL for the 'Full view' link
90 // in embedded mode should be the current
91 // view URL, except with 'nav', 'tracklist',
92 // and 'overview' parameters forced to 1.
93
94 return browser.makeCurrentViewURL({ nav: 1, tracklist: 1, overview: 1 });
95 },
96 updateBrowserURL: true
97 };
98
99 //if there is ?addFeatures in the query params,
100 //define a store for data from the URL
101 if( queryParams.addFeatures ) {
102 config.stores.url.features = JSON.parse( queryParams.addFeatures );
103 }
104
105 // if there is ?addTracks in the query params, add
106 // those track configurations to our initial
107 // configuration
108 if( queryParams.addTracks ) {
109 config.tracks = JSON.parse( queryParams.addTracks );
110 }
111
112 // if there is ?addStores in the query params, add
113 // those store configurations to our initial
114 // configuration
115 if( queryParams.addStores ) {
116 config.stores = JSON.parse( queryParams.addStores );
117 }
118
119 // create a JBrowse global variable holding the JBrowse instance
120 JBrowse = new Browser( config );
121 });
122 </script>
123
124
125
126 </script>
127 <script src="gff_app.js"></script>
128 </body>
129 </html>