Mercurial > repos > ebi-gxa > suite_scanpy_scripts

changeset 2:d7ecda865870 draft

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"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit ba0c88ab1b077a0b1c60c8d3c529e72ca6946226"
author ebi-gxa
date Thu, 12 Mar 2020 09:13:52 +0000
parents ab541e797711
children 542601f1e574
files repository_dependencies.xml
diffstat 1 files changed, 21 insertions(+), 13 deletions(-) [+]
line wrap: on
line diff
--- a/repository_dependencies.xml	Wed Mar 20 12:03:00 2019 -0400
+++ b/repository_dependencies.xml	Thu Mar 12 09:13:52 2020 +0000
@@ -1,16 +1,24 @@
 <?xml version="1.0" ?>
 <repositories description="scanpy-scripts, command-line wrappers around Scanpy.">
-    <repository changeset_revision="81db17245979" name="scanpy_parameter_iterator" owner="ebi-gxa" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="19805a556cd6" name="scanpy_normalise_data" owner="ebi-gxa" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="dcb4309e2829" name="scanpy_run_pca" owner="ebi-gxa" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="5a4b5c019b09" name="scanpy_find_markers" owner="ebi-gxa" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="2cb836f82ddb" name="scanpy_find_cluster" owner="ebi-gxa" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="eae21a6c3128" name="scanpy_scale_data" owner="ebi-gxa" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="f2c0e1369bd5" name="scanpy_filter_genes" owner="ebi-gxa" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="6218367cb710" name="scanpy_run_umap" owner="ebi-gxa" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="5494c27c5880" name="scanpy_run_tsne" owner="ebi-gxa" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="ada6d9bd638d" name="scanpy_compute_graph" owner="ebi-gxa" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="c5e166a64abb" name="scanpy_read_10x" owner="ebi-gxa" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="4765cea381e3" name="scanpy_find_variable_genes" owner="ebi-gxa" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="cad451be0a2a" name="scanpy_filter_cells" owner="ebi-gxa" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="5b33fec5d3cd" name="scanpy_find_cluster" owner="ebi-gxa" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="224d1c9d7f19" name="scanpy_plot_embed" owner="ebi-gxa" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="4c806f3f094c" name="scanpy_filter_cells" owner="ebi-gxa" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="9fd2a7160b35" name="scanpy_filter_genes" owner="ebi-gxa" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="b9dc69f6b3f1" name="scanpy_run_fdg" owner="ebi-gxa" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="5704635cef67" name="scanpy_normalise_data" owner="ebi-gxa" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="88d2a78c8259" name="scanpy_run_diffmap" owner="ebi-gxa" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="62f480b594c5" name="scanpy_plot_trajectory" owner="ebi-gxa" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="06b56d36fccc" name="scanpy_run_pca" owner="ebi-gxa" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="edb0d2e8ab66" name="scanpy_scale_data" owner="ebi-gxa" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="cac46c390532" name="scanpy_run_dpt" owner="ebi-gxa" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="a13cc1d401b7" name="scanpy_parameter_iterator" owner="ebi-gxa" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="0df0c864dc68" name="anndata_ops" owner="ebi-gxa" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="80a4c2939242" name="scanpy_run_tsne" owner="ebi-gxa" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="e20b84e8b579" name="scanpy_find_markers" owner="ebi-gxa" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="ae4616f3806e" name="scanpy_run_paga" owner="ebi-gxa" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="77f16c784c19" name="scanpy_compute_graph" owner="ebi-gxa" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="70840a50d3d2" name="scanpy_find_variable_genes" owner="ebi-gxa" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="88b0cb06c2b1" name="scanpy_regress_variable" owner="ebi-gxa" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="4af2017cbece" name="scanpy_read_10x" owner="ebi-gxa" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="f59c9aaf8e7c" name="scanpy_run_umap" owner="ebi-gxa" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
 </repositories>
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