# HG changeset patch
# User ebi-gxa
# Date 1587029647 0
# Node ID 52ccdd3fb5e830e2f1f954b41951b73c0b56203b
# Parent 7ef152a02e71af6005465030965382f61fe6258f
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 3fc448754d6720855f781caa7938e33d3961b092"
diff -r 7ef152a02e71 -r 52ccdd3fb5e8 README
--- a/README Wed Mar 13 12:52:17 2019 -0400
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,1 +0,0 @@
-Seurat tools
diff -r 7ef152a02e71 -r 52ccdd3fb5e8 seurat_macros.xml
--- a/seurat_macros.xml Wed Mar 13 12:52:17 2019 -0400
+++ b/seurat_macros.xml Thu Apr 16 09:34:07 2020 +0000
@@ -1,34 +1,110 @@
-
- 0.0.5
-
+ 0.0.6
+ 3.1.1
seurat-scripts
-
/dev/null | grep -v -i "WARNING: ")
]]>
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+ #if $input.format == "anndata"
+ --input-object-file '$input.anndata_file' --input-format anndata
+ #else if $input.format == "loom"
+ --input-object-file '$input.loom_file' --input-format loom
+ #else if $input.format == "rds_seurat"
+ --input-object-file '$input.rds_seurat_file' --input-format seurat
+ #else if $input.format == "rds_sce"
+ --input-object-file '$input.rds_sce_file' --input-format singlecellexperiment
+ #end if
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+ format == 'loom'
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+ format == 'rds_seurat'
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+ format == 'rds_sce'
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+ #if $format == "anndata"
+ --output-object-file '$anndata_file' --output-format anndata
+ #else if $format == "loom"
+ --output-object-file seurat_obj.loom --output-format loom
+ #else if $format == "rds_seurat"
+ --output-object-file '$rds_seurat_file' --output-format seurat
+ #else if $format == "rds_sce"
+ --output-object-file '$rds_sce_file' --output-format singlecellexperiment
+ #end if
+
+
-
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@@ -45,6 +121,7 @@
url = {https://github.com/ebi-gene-expression-group/r-seurat-scripts.git},
}
+ 10.1101/2020.04.08.032698
diff -r 7ef152a02e71 -r 52ccdd3fb5e8 seurat_scale_data.xml
--- a/seurat_scale_data.xml Wed Mar 13 12:52:17 2019 -0400
+++ b/seurat_scale_data.xml Thu Apr 16 09:34:07 2020 +0000
@@ -1,4 +1,4 @@
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scale and center genes
seurat_macros.xml
@@ -8,21 +8,21 @@
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+ ^[\(\w\)]+$
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@@ -61,13 +65,13 @@
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