Mercurial > repos > ebi-gxa > seurat_export_cellbrowser

diff seurat_export_cellbrowser.xml @ 3:d0ab20c5b81d draft default tip

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planemo upload commit 34c30124158749b9eef51d5f323b608a503e7940
author ebi-gxa
date Sun, 01 Oct 2023 09:06:07 +0000
parents 6e876c9925c5
children
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--- a/seurat_export_cellbrowser.xml	Thu Apr 16 09:31:53 2020 +0000
+++ b/seurat_export_cellbrowser.xml	Sun Oct 01 09:06:07 2023 +0000
@@ -1,4 +1,4 @@
-<tool id="seurat_export_cellbrowser" name="Seurat Export2CellBrowser" version="@SEURAT_VERSION@_@VERSION@+galaxy0">
+<tool id="seurat_export_cellbrowser" name="Seurat Export2CellBrowser" profile="18.01" version="@SEURAT_VERSION@+galaxy0">
     <description>produces files for UCSC CellBrowser import.</description>
     <macros>
         <import>seurat_macros.xml</import>
@@ -24,7 +24,7 @@
 
     <inputs>
         <expand macro="input_object_params"/>
-        <param name="markers_file" type="data" format="txt" label="Marker genes file from Seurat" />
+        <param name="markers_file" type="data" optional="True" format="txt" label="Marker genes file from Seurat" />
     </inputs>
 
     <outputs>
@@ -33,9 +33,13 @@
 
     <tests>
         <test>
-            <param name="rds_input" ftype="rdata" value="out_runtsne.rds"/>
-            <param name="markers_file" ftype="txt" value="out_markers.csv"/>
-            <output name="output" ftype="tar" value="out_cellbrowser_bundle.tar"/>
+            <param name="rds_seurat_file" ftype="rdata" value="E-MTAB-6077-3k_features_90_cells-tsne.rds"/>
+            <param name="markers_file" ftype="txt" value="E-MTAB-6077-3k_features_90_cells-markers.csv"/>
+            <output name="output" >
+              <assert_contents>
+                <has_size value="2182656" delta="200000"/>
+              </assert_contents>
+            </output>
         </test>
     </tests>
     <help><![CDATA[