# HG changeset patch
# User ebi-gxa
# Date 1588340696 0
# Node ID cb4ebb47c3b960edf155c91e08e68454f4a6a161
# Parent  39b208cca9f11755fc61eacc1793b285124f9f39
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 2f718294665c9d01702ad765904972f463154cd6"

diff -r 39b208cca9f1 -r cb4ebb47c3b9 scpred_preprocess_data.xml
--- a/scpred_preprocess_data.xml	Wed Apr 29 16:35:01 2020 +0000
+++ b/scpred_preprocess_data.xml	Fri May 01 13:44:56 2020 +0000
@@ -1,4 +1,4 @@
-<tool id="scpred_preprocess_data" name="Scpred pre-process" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@">
+<tool id="scpred_preprocess_data" name="Scpred pre-process" version="@TOOL_VERSION@+galaxy2" profile="@PROFILE@">
     <description>Pre-process input dataset (no train/test split)</description>
     <macros>
         <import>scpred_macros.xml</import>
@@ -17,7 +17,7 @@
          ]]></command>
     <inputs>
          <param type="data" name="input_sce_object" label="SCE object containing expression data" format="rdata" help="File with serialized SingleCellExperiment object that contains expression matrix" />
-         <param type="text" name="norm_counts_slot" value="normcounts" label="Normalised counts slot" help="Slot containing normalised counts in input SCE object" />
+         <param type="text" name="norm_counts_slot" optional="true" value="normcounts" label="Normalised counts slot" help="Slot containing normalised counts in input SCE object" />
     </inputs> 
     <outputs>
         <data name="output_mat_object" format="rdata" />