comparison scpred_preprocess_data.xml @ 2:cb4ebb47c3b9 draft

"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 2f718294665c9d01702ad765904972f463154cd6"

1:39b208cca9f1

<tool id="scpred_preprocess_data" name="Scpred pre-process" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@">
    <description>Pre-process input dataset (no train/test split)</description>
    <macros>
        <import>scpred_macros.xml</import>
    </macros>
    <expand macro="requirements" />

        #end if

         ]]></command>
    <inputs>
         <param type="data" name="input_sce_object" label="SCE object containing expression data" format="rdata" help="File with serialized SingleCellExperiment object that contains expression matrix" />
         <param type="text" name="norm_counts_slot" value="normcounts" label="Normalised counts slot" help="Slot containing normalised counts in input SCE object" />
    </inputs> 
    <outputs>
        <data name="output_mat_object" format="rdata" />
        <data name="output_labels" format="txt" />
    </outputs>

2:cb4ebb47c3b9

<tool id="scpred_preprocess_data" name="Scpred pre-process" version="@TOOL_VERSION@+galaxy2" profile="@PROFILE@">
    <description>Pre-process input dataset (no train/test split)</description>
    <macros>
        <import>scpred_macros.xml</import>
    </macros>
    <expand macro="requirements" />

        #end if

         ]]></command>
    <inputs>
         <param type="data" name="input_sce_object" label="SCE object containing expression data" format="rdata" help="File with serialized SingleCellExperiment object that contains expression matrix" />
         <param type="text" name="norm_counts_slot" optional="true" value="normcounts" label="Normalised counts slot" help="Slot containing normalised counts in input SCE object" />
    </inputs> 
    <outputs>
        <data name="output_mat_object" format="rdata" />
        <data name="output_labels" format="txt" />
    </outputs>