comparison scpred_predict.xml @ 4:b24a33e612c5 draft

"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 2f718294665c9d01702ad765904972f463154cd6"

3:1993f429564a

<tool id="scpred_predict_labels" name="Scpred predict" version="@TOOL_VERSION@+galaxy1">
    <description>Make cell type predictions using trained model.</description>
     <macros>
        <import>scpred_macros.xml</import>
    </macros>
    <expand macro="requirements" />

        ]]></command>
    <inputs>
        <param type="data" name="input_object" label="Input SCE object" format="rdata" help="Input SCE object in .rds format" />
        <param type="data" name="pred_data" label="Matrix with query data" format="rdata" help="Path to the input prediction matrix in .rds format"/>
        <param type="data" name="test_labels" format="txt" label="Test labels" help="Path to the test labels file for evalutation of model performance in text format" />
        <param type="text" name="cell_types_column" value="cell_type2" label="Cell types column name" help="Column name of true labels in provided metadata file" />
    </inputs>
    <outputs>
        <data name="output_tbl_path" format="txt" />
        <data name="plot_path" format="txt" />
        <data name="confusion_table" format="txt" />

4:b24a33e612c5

<tool id="scpred_predict_labels" name="Scpred predict" version="@TOOL_VERSION@+galaxy2">
    <description>Make cell type predictions using trained model.</description>
     <macros>
        <import>scpred_macros.xml</import>
    </macros>
    <expand macro="requirements" />

        ]]></command>
    <inputs>
        <param type="data" name="input_object" label="Input SCE object" format="rdata" help="Input SCE object in .rds format" />
        <param type="data" name="pred_data" label="Matrix with query data" format="rdata" help="Path to the input prediction matrix in .rds format"/>
        <param type="data" name="test_labels" optional="true" format="txt" label="Test labels" help="Path to the test labels file for evalutation of model performance in text format" />
        <param type="text" name="cell_types_column" value="cell_type2" optional="true" label="Cell types column name" help="Column name of true labels in provided metadata file" />
    </inputs>
    <outputs>
        <data name="output_tbl_path" format="txt" />
        <data name="plot_path" format="txt" />
        <data name="confusion_table" format="txt" />