# HG changeset patch
# User ebi-gxa
# Date 1587741435 0
# Node ID a0894de9a4a5416f2dbcc02f9328e5534c34fb00
# Parent  7f1ffbc4e298203eaf4d9a00b874ec873fe9a78e
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 241c850301f8094f6aa0016e2335a8b550c29aed"

diff -r 7f1ffbc4e298 -r a0894de9a4a5 scpred_eigen_decomp.xml
--- a/scpred_eigen_decomp.xml	Thu Apr 16 09:28:24 2020 +0000
+++ b/scpred_eigen_decomp.xml	Fri Apr 24 15:17:15 2020 +0000
@@ -5,7 +5,15 @@
     </macros>
     <expand macro="requirements" />
     <command detect_errors="exit_code"><![CDATA[
-        scpred_eigen_decomp.R --training-matrix "${training_matrix}" --log-transform "${log_transform}" --training-labels "${training_labels}" --principal-comps "${principal_components}" --output-path "${output_object_path}" ]]></command>
+        scpred_eigen_decomp.R --training-matrix "${training_matrix}" --training-labels "${training_labels}"  --output-path "${output_object_path}"
+
+        #if $log_transform
+        --log-transform "${log_transform}" 
+        #end if
+        #if $principal_components
+        --principal-comps "${principal_components}"
+        #end if
+         ]]></command>
     <inputs>
         <param type="data" name="training_matrix" label="Training matrix" format="rdata" help="Training matrix obtained from train/test split step" />
         <param type="boolean" name="log_transform" label="log-transform" checked="True" help="Should log-transform be performed on training data?" />
diff -r 7f1ffbc4e298 -r a0894de9a4a5 scpred_macros.xml
--- a/scpred_macros.xml	Thu Apr 16 09:28:24 2020 +0000
+++ b/scpred_macros.xml	Fri Apr 24 15:17:15 2020 +0000
@@ -4,7 +4,7 @@
     <token name="@PROFILE@">18.01</token>
     <xml name="requirements">
         <requirements>
-            <requirement type="package" version="0.0.5">scpred-cli</requirement>
+            <requirement type="package" version="0.0.7">scpred-cli</requirement>
                 <yield/>
         </requirements>
     </xml>