Mercurial > repos > ebi-gxa > scpred_eigen_decompose
comparison scpred_eigen_decomp.xml @ 2:a0894de9a4a5 draft
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 241c850301f8094f6aa0016e2335a8b550c29aed"
| author | ebi-gxa |
|---|---|
| date | Fri, 24 Apr 2020 15:17:15 +0000 |
| parents | 9c3ffe4b1088 |
| children | 941076e7f81c |
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| 1:7f1ffbc4e298 | 2:a0894de9a4a5 |
|---|---|
| 3 <macros> | 3 <macros> |
| 4 <import>scpred_macros.xml</import> | 4 <import>scpred_macros.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 <expand macro="requirements" /> | 6 <expand macro="requirements" /> |
| 7 <command detect_errors="exit_code"><![CDATA[ | 7 <command detect_errors="exit_code"><![CDATA[ |
| 8 scpred_eigen_decomp.R --training-matrix "${training_matrix}" --log-transform "${log_transform}" --training-labels "${training_labels}" --principal-comps "${principal_components}" --output-path "${output_object_path}" ]]></command> | 8 scpred_eigen_decomp.R --training-matrix "${training_matrix}" --training-labels "${training_labels}" --output-path "${output_object_path}" |
| 9 | |
| 10 #if $log_transform | |
| 11 --log-transform "${log_transform}" | |
| 12 #end if | |
| 13 #if $principal_components | |
| 14 --principal-comps "${principal_components}" | |
| 15 #end if | |
| 16 ]]></command> | |
| 9 <inputs> | 17 <inputs> |
| 10 <param type="data" name="training_matrix" label="Training matrix" format="rdata" help="Training matrix obtained from train/test split step" /> | 18 <param type="data" name="training_matrix" label="Training matrix" format="rdata" help="Training matrix obtained from train/test split step" /> |
| 11 <param type="boolean" name="log_transform" label="log-transform" checked="True" help="Should log-transform be performed on training data?" /> | 19 <param type="boolean" name="log_transform" label="log-transform" checked="True" help="Should log-transform be performed on training data?" /> |
| 12 <param type="data" name="training_labels" label="training labels file" format="txt" help="Path to training labels in text format" /> | 20 <param type="data" name="training_labels" label="training labels file" format="txt" help="Path to training labels in text format" /> |
| 13 <param type="integer" name="principal_components" label="Number of pincipal components" value="10" help="Number of principal components" /> | 21 <param type="integer" name="principal_components" label="Number of pincipal components" value="10" help="Number of principal components" /> |