# HG changeset patch
# User ebi-gxa
# Date 1588760009 0
# Node ID 4d3a4b1ea4695f505396acef2afb048f70618e9b
# Parent  b29f9ec247ff4c09ad68a0d070b23cac6cb2236b
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 87e6fbd3764e43b31eaa9baf9df5692eb83c8fdc"

diff -r b29f9ec247ff -r 4d3a4b1ea469 scmap_scmap_cell.xml
--- a/scmap_scmap_cell.xml	Mon May 04 11:09:29 2020 +0000
+++ b/scmap_scmap_cell.xml	Wed May 06 10:13:29 2020 +0000
@@ -23,7 +23,7 @@
       <param name="n_nearest_neighbours" type="integer" label="Number of nearest neighbours" value='5' help="A positive integer specifying the number of nearest neighbours to find" />
       
      <conditional name="cluster_projection">
-        <param name="cluster_projection" type="boolean" checked="false" label="Annotate cells of the projection dataset using labels of the reference?" help="If cell cluster annotation is available for the reference datasets, in addition to finding top 10 nearest neighbours scmap-cell also allows to annotate cells of the projection dataset using labels of the reference."/>
+        <param name="do_cluster_projection" type="boolean" checked="false" label="Annotate cells of the projection dataset using labels of the reference?" help="If cell cluster annotation is available for the reference datasets, in addition to finding top 10 nearest neighbours scmap-cell also allows to annotate cells of the projection dataset using labels of the reference."/>
         <when value="true" >
           <param name="cluster_col" type="text" label="Cluster column" value="cell_type1" help="Column name in the 'colData' slot of the SingleCellExperiment object containing the cell classification information." />
         </when>
@@ -37,7 +37,7 @@
       <data name="closest_cells_text_file" format="csv" />
       <data name="closest_cells_similarities_text_file" format="csv" />
       <data name="closest_cells_clusters_csv" format="csv">
-        <filter>cluster_projection == "true"</filter>
+        <filter>cluster_projection['do_cluster_projection'] == "true"</filter>
       </data>
     </outputs>
     <tests>