Mercurial > repos > ebi-gxa > scmap_scmap_cell
comparison scmap_scmap_cell.xml @ 8:fc36baa3b7ba draft default tip
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 53f809e83bf7784787f78f16dc78d7601231dcfa"
| author | ebi-gxa |
|---|---|
| date | Fri, 15 May 2020 09:24:36 +0000 |
| parents | cec72a19da8b |
| children |
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| 7:cec72a19da8b | 8:fc36baa3b7ba |
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| 1 <tool id="scmap_scmap_cell" name="Scmap cell projection" version="@TOOL_VERSION@+galaxy2" profile="@PROFILE@"> | 1 <tool id="scmap_scmap_cell" name="Scmap cell projection" version="@TOOL_VERSION@+galaxy3" profile="@PROFILE@"> |
| 2 <description>searches each cell in a query dataset for the nearest neighbours by cosine distance within a collection of reference datasets.</description> | 2 <description>searches each cell in a query dataset for the nearest neighbours by cosine distance within a collection of reference datasets.</description> |
| 3 <macros> | 3 <macros> |
| 4 <import>scmap_macros.xml</import> | 4 <import>scmap_macros.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 <expand macro="requirements" /> | 6 <expand macro="requirements" /> |
| 35 <outputs> | 35 <outputs> |
| 36 <data name="output_single_cell_experiment" format="rdata" /> | 36 <data name="output_single_cell_experiment" format="rdata" /> |
| 37 <data name="closest_cells_text_file" format="csv" /> | 37 <data name="closest_cells_text_file" format="csv" /> |
| 38 <data name="closest_cells_similarities_text_file" format="csv" /> | 38 <data name="closest_cells_similarities_text_file" format="csv" /> |
| 39 <data name="closest_cells_clusters_csv" format="csv"> | 39 <data name="closest_cells_clusters_csv" format="csv"> |
| 40 <filter>cluster_projection['do_cluster_projection'] == "true"</filter> | 40 <filter>cluster_projection['do_cluster_projection']</filter> |
| 41 </data> | 41 </data> |
| 42 </outputs> | 42 </outputs> |
| 43 <tests> | 43 <tests> |
| 44 <test> | 44 <test> |
| 45 <param name="index_single_cell_experiment" value="index_cell.rds" ftype="rdata"/> | 45 <param name="index_single_cell_experiment" value="index_cell.rds" ftype="rdata"/> |