# HG changeset patch
# User ebi-gxa
# Date 1552492302 14400
# Node ID 4765cea381e3a66f4fe30ab183b81a86fd4ee89a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy-scripts commit dca9be719ceb86abad7589c240b1bb7656826c48-dirty
diff -r 000000000000 -r 4765cea381e3 scanpy-find-variable-genes.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/scanpy-find-variable-genes.xml Wed Mar 13 11:51:42 2019 -0400
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+ based on normalised dispersion of expression
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+ scanpy_macros.xml
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+ 10.1038/nbt.3192
+ 10.1038/ncomms14049
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diff -r 000000000000 -r 4765cea381e3 scanpy_macros.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/scanpy_macros.xml Wed Mar 13 11:51:42 2019 -0400
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+ 1.3.2
+ More information can be found at https://scanpy.readthedocs.io
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+#if $do_plotting.plot
+ -P output.png
+ --projectio $do_plotting.projection
+ --components $do_plotting.components
+ #if $do_plotting.color_by
+ --color-by $do_plotting.color_by
+ #end if
+ #if $do_plotting.groups
+ --group $do_plotting.groups
+ #end if
+ #if $do_plotting.use_raw
+ --use-raw
+ #end if
+ #if $do_plotting.palette
+ --palette $do_plotting.palette
+ #end if
+ #if $do_plotting.edges
+ --edges
+ #end if
+ #if $do_plotting.arrows
+ --arrows
+ #end if
+ #if not $do_plotting.sort_order
+ --no-sort-order
+ #end if
+ #if $do_plotting.frameoff
+ --frameoff
+ #end if
+#end if
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+ scanpy-scripts
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+ 10.1186/s13059-017-1382-0
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+ @misc{githubscanpy-scripts,
+ author = {Ni Huang, EBI Gene Expression Team},
+ year = {2018},
+ title = {Scanpy-scripts: command line interface for Scanpy},
+ publisher = {GitHub},
+ journal = {GitHub repository},
+ url = {https://github.com/ebi-gene-expression-group/scanpy-scripts},
+ }
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