Mercurial > repos > ebi-gxa > dropletutils_read_10x
changeset 3:fb1d0536bd11 draft
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit e1ed5cbba4d1c042b91cefec41f98e7c736dfbe2"
| author | ebi-gxa |
|---|---|
| date | Mon, 29 Jun 2020 17:02:26 +0000 |
| parents | 8a048f35eaee |
| children | 3fe8973bc205 |
| files | dropletutils-read-10x.xml |
| diffstat | 1 files changed, 15 insertions(+), 1 deletions(-) [+] |
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--- a/dropletutils-read-10x.xml Thu Apr 16 08:50:57 2020 +0000 +++ b/dropletutils-read-10x.xml Mon Jun 29 17:02:26 2020 +0000 @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="utf-8"?> -<tool id="dropletutils_read_10x" name="DropletUtils Read10x" version="@TOOL_VERSION@+galaxy0"> +<tool id="dropletutils_read_10x" name="DropletUtils Read10x" version="@TOOL_VERSION@+galaxy1"> <description>into SingleCellExperiment object</description> <macros> <import>dropletutils_macros.xml</import> @@ -13,12 +13,26 @@ -s . -c TRUE -o '${output_rds}' + +#if $add_metadata_file +--metadata-files "${metadata_files}" +--cell-id-column "${cell_id_column}" +#end if + + ]]></command> <inputs> <param name="matrix" type="data" format="txt" label="Expression matrix in sparse matrix format (.mtx)"/> <param name="genes" type="data" format="tsv,tabular" label="Gene table"/> <param name="barcodes" type="data" format="tsv,tabular" label="Barcode/cell table"/> + <conditional name="add_metadata"> + <param name="add_metadata_file" type="boolean" checked="false" label="Should metadata file be added?" /> + <when value="true" > + <param name="metadata_files" type="data" label="Metadata file" help="Provide metadata file e.g. containing cell types"/> + <param name="cell_id_column" type="text" label="Cell ID column" help="Cell ID column. Values must match those provided in the expression matrix." /> + </when> + </conditional> </inputs> <outputs>