Mercurial > repos > ebi-gxa > droplet_barcode_plot

diff dropletBarcodePlot.xml @ 2:e6fd8f3d8c76 draft

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"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/droplet-rank-plot/.shed.yml commit 39412ddc5dbeb136161a9d9fb0f9f78520159ccc"
author ebi-gxa
date Tue, 24 Mar 2020 16:02:40 +0000
parents ef7b3ffad3bf
children 09df222b1a15
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--- a/dropletBarcodePlot.xml	Tue Mar 24 11:07:31 2020 +0000
+++ b/dropletBarcodePlot.xml	Tue Mar 24 16:02:40 2020 +0000
@@ -4,7 +4,7 @@
       <requirement type="package" version="0.0.1">scxa-plots</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
-        $__tool_directory__/dropletBarcodePlot.R --output-plot "${plot_file}" --output-thresholds "${thresholds_file}" --label "${label}" --density-bins "${density_bins}" --roryk-multiplier "${roryk_multiplier}"
+        dropletBarcodePlot.R --output-plot "${plot_file}" --output-thresholds "${thresholds_file}" --label "${label}" --density-bins "${density_bins}" --roryk-multiplier "${roryk_multiplier}"
 #if $input.type == 'mtx_matrix'
 --mtx-matrix ${input.mtx_matrix}
 #if $input.cellsbyrow