comparison dropletBarcodePlot.xml @ 1:ef7b3ffad3bf draft

"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/droplet-rank-plot/.shed.yml commit 6f31a23343fd7d0a834eebe268d820733eb483b5"

0:0986692e6128

<tool id="_dropletBarcodePlot" name="Droplet barcode rank plot" version="1.6.1+galaxy1" profile="18.01">
    <description>Creates a barcode rank plot for quality control of droplet single-cell RNA-seq data</description>
    <requirements>
      <requirement type="package" version="1.6.1">bioconductor-dropletutils</requirement>
      <requirement type="package" version="0.3.9">openblas</requirement>
      <requirement type="package" version="1.2">r-matrix</requirement>
      <requirement type="package" version="3.2.1">r-ggplot2</requirement>
      <requirement type="package" version="1.6.4">r-optparse</requirement>
      <requirement type="package" version="2.3">r-gridextra</requirement>
      <requirement type="package" version="0.12.0">bioconductor-delayedarray</requirement>
    </requirements>
    <command detect_errors="exit_code"><![CDATA[
        $__tool_directory__/dropletBarcodePlot.R --output-plot "${plot_file}" --output-thresholds "${thresholds_file}" --label "${label}" --density-bins "${density_bins}" --roryk-multiplier "${roryk_multiplier}"
#if $input.type == 'mtx_matrix'
--mtx-matrix ${input.mtx_matrix}

1:ef7b3ffad3bf

<tool id="_dropletBarcodePlot" name="Droplet barcode rank plot" version="1.6.1+galaxy2" profile="18.01">
    <description>Creates a barcode rank plot for quality control of droplet single-cell RNA-seq data</description>
    <requirements>
      <requirement type="package" version="0.0.1">scxa-plots</requirement>
    </requirements>
    <command detect_errors="exit_code"><![CDATA[
        $__tool_directory__/dropletBarcodePlot.R --output-plot "${plot_file}" --output-thresholds "${thresholds_file}" --label "${label}" --density-bins "${density_bins}" --roryk-multiplier "${roryk_multiplier}"
#if $input.type == 'mtx_matrix'
--mtx-matrix ${input.mtx_matrix}