Mercurial > repos > ebi-gxa > ct_combine_tool_outputs
changeset 2:15855316fcd9 draft
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit c6a3af3aa798c106d1a8f3e2bf1aef5251d0bb7e"
| author | ebi-gxa |
|---|---|
| date | Mon, 27 Apr 2020 13:14:50 +0000 |
| parents | 0ba1f22f237e |
| children | c25de5b5e587 |
| files | ct_combine_tool_outputs.xml |
| diffstat | 1 files changed, 8 insertions(+), 3 deletions(-) [+] |
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--- a/ct_combine_tool_outputs.xml Thu Apr 16 08:47:10 2020 +0000 +++ b/ct_combine_tool_outputs.xml Mon Apr 27 13:14:50 2020 +0000 @@ -10,15 +10,20 @@ cp '$table' input_dir/; #end for - combine_tool_outputs.R --input-dir input_dir --top-labels-num "${top_labels_num}" --exclusions "${exclusions}" --scores "${scores}" --output-table "${output_table}" ]]></command> + combine_tool_outputs.R --input-dir input_dir --top-labels-num "${top_labels_num}" --scores "${scores}" --output-table "${output_table}" + + #if $exclusions + --exclusions "${exclusions}" + #end if + ]]></command> <inputs> - <param type="data" name="input_tables" label="Tables with predicted labels" multiple="true" format="tsv" help="Standardised tables obtained from multiple classifiers" /> + <param type="data" name="input_tables" label="Tables with predicted labels" multiple="true" format="txt" help="Standardised tables obtained from multiple classifiers" /> <param type="integer" name="top_labels_num" label="Number of top labels" value='3' help="Number of top labels to select" /> <param type="data" name="exclusions" label="Exclusions file" format="yml" optional="true" help="Yaml file with trivial terms and unlabelled cells" /> <param type="boolean" name="scores" label="scores" checked="false" help="Are scores included into the tool outpus?" /> </inputs> <outputs> - <data name="output_table" format="tsv" /> + <data name="output_table" format="txt" /> </outputs> <tests> <test>