# HG changeset patch
# User dvanzessen
# Date 1563197671 14400
# Node ID c9f69375e072111974d655ff14261b80a2116f8e
# Parent 49397129aec09d6c407ef36931a3905733ead9aa
Uploaded
diff -r 49397129aec0 -r c9f69375e072 data_manager/fetch_vep_cache_data.xml
--- a/data_manager/fetch_vep_cache_data.xml Mon Jul 15 05:20:39 2019 -0400
+++ b/data_manager/fetch_vep_cache_data.xml Mon Jul 15 09:34:31 2019 -0400
@@ -1,6 +1,9 @@
ensembl-vep
+ perl-dbi
+ perl-archive-zip
+ perl-dbd-mysql
fetching
@@ -179,4 +182,4 @@
There is no help
-
\ No newline at end of file
+
diff -r 49397129aec0 -r c9f69375e072 dir_plugins/fetch_vep_cache_data.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/dir_plugins/fetch_vep_cache_data.xml Mon Jul 15 09:34:31 2019 -0400
@@ -0,0 +1,185 @@
+
+
+ ensembl-vep
+ perl-dbi
+ perl-archive-zip
+ perl-dbd-mysql
+
+ fetching
+
+
+python $__tool_directory__/fetch_vep_cache_data.py
+--output-file ${ out_file }
+--output-dir ${ out_file.extra_files_path }
+--species ${ species }
+--species-type ${ species_type }
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ There is no help
+
+