Mercurial > repos > dvanzessen > pvac_seq_emc

diff pvac-seq.xml @ 4:2ae8171ba4d9 draft

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Uploaded
author dvanzessen
date Wed, 17 Jul 2019 09:45:40 -0400
parents 409392edf036
children
line wrap: on
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--- a/pvac-seq.xml	Wed Jul 17 08:43:23 2019 -0400
+++ b/pvac-seq.xml	Wed Jul 17 09:45:40 2019 -0400
@@ -16,7 +16,9 @@
         galaxy 
         ${allele} 
         ${algs} 
-        `pwd` && mv MHC_Class_II/galaxy.final.tsv $output
+        `pwd` && 
+        mv combined/galaxy.filtered.tsv ${output_filtered} && 
+        mv combined/galaxy.all_epitopes.tsv ${output_all}
 
     ]]></command>
     <inputs>
@@ -50,7 +52,8 @@
         </param>
     </inputs>
     <outputs>
-        <data name="output" format="tabular"/>
+        <data name="output_all" format="tabular"/>
+        <data name="output_filtered" format="tabular"/>
     </outputs>
     <help><![CDATA[
         TODO: Fill in help.