# HG changeset patch
# User dvanzessen
# Date 1564127679 14400
# Node ID 7211d3a78fe00031b257480aa92ac893dfe228a6
# Parent  cb60ea3f8f62588c4a47070d01f47384717ead1c
Uploaded

diff -r cb60ea3f8f62 -r 7211d3a78fe0 bcbio-nextgen.xml
--- a/bcbio-nextgen.xml	Mon Jul 22 04:59:16 2019 -0400
+++ b/bcbio-nextgen.xml	Fri Jul 26 03:54:39 2019 -0400
@@ -10,7 +10,7 @@
         #for $i, $sample in enumerate( $samples )
             --input $sample.forward:$sample.reverse:$sample.phenotype
         #end for
-        && bcbio_nextgen.py \$BCBIO_DIRECTORY/galaxy/bcbio_system.yaml `pwd`/config.yaml && 
+        && bcbio_nextgen.py \$BCBIO_DIRECTORY/galaxy/bcbio_system.yaml `pwd`/config.yaml -t local -n \$BCBIO_CORES && 
         zcat final/*/Batch1-ensemble-annotated.vcf.gz > $output_vcf &&
         python $__tool_directory__/make_html.py --input-dir $everything_else.files_path --root-html $everything_else
     ]]></command>