Mercurial > repos > drosofff > sr_bowtier
changeset 3:752bd9400127 draft
Uploaded
author | drosofff |
---|---|
date | Mon, 12 May 2014 12:24:28 -0400 |
parents | 32b97daad1f9 |
children | cb331ca63e04 |
files | bowtie_indices_ged.loc.sample |
diffstat | 1 files changed, 49 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/bowtie_indices_ged.loc.sample Mon May 12 12:24:28 2014 -0400 @@ -0,0 +1,49 @@ +#This is a file adapted from bowtie_indices.loc +#<unique_name> <file_base_path> +# +Dmel /home/galaxy/galaxy-dist/bowtie/Dmel/dmel-all-chromosome-r5.49 +Dmel_2R /home/galaxy/galaxy-dist/bowtie/Dmel_2R/Dmel_2R +Dmel_all-gene_extended2000 /home/galaxy/galaxy-dist/bowtie/Dmel_all-gene_extended2000/dmel-all-gene_extended2000-r5.49 +Dmel_all_genes /home/galaxy/galaxy-dist/bowtie/Dmel_all-gene/Dmel_all-gene +Dmel_all-intergenic /home/galaxy/galaxy-dist/bowtie/Dmel_all-intergenic/dmel-all-intergenic-r5.49 +Dmel_all-intron /home/galaxy/galaxy-dist/bowtie/Dmel_all-intron/dmel-all-intron-r5.49 +Dmel_all-miscRNA /home/galaxy/galaxy-dist/bowtie/Dmel_all-miscRNA/dmel-all-miscRNA-r5.49 +Dmel_all-ncRNA /home/galaxy/galaxy-dist/bowtie/Dmel_all-ncRNA/dmel-all-ncRNA-r5.49 +Dmel_all-tRNA /home/galaxy/galaxy-dist/bowtie/Dmel_all-tRNA/dmel-all-tRNA-r5.49 +Ensembl_extented_tRNA /home/galaxy/galaxy-dist/bowtie/Ensembl_Dmel_extended_tRNA/Ensembl_Dmel_extended_tRNA +Dmel_all-transcript /home/galaxy/galaxy-dist/bowtie/Dmel_all-transcript/dmel-all-transcript-r5.49 +Dmel_all-transposon /home/galaxy/galaxy-dist/bowtie/Dmel_all-transposon/dmel-all-transposon-r5.49 +Dmel_all-transposon_merge /home/galaxy/galaxy-dist/bowtie/Dmel_all-transposon_merged/Dmel_all-transposon_merge +Dmel_all-transposon_merge_minBrennecke /home/galaxy/galaxy-dist/bowtie/Dmel_all-transposon_merged_min_Brennecke/Dmel_all-transposon_merged_min_Brennecke +Transposons_set_BDGBv941 /home/galaxy/galaxy-dist/bowtie/transposons_set/Dmel_transposon_set_BDGP_v941 +Ensembl_transposon_set /home/galaxy/galaxy-dist/bowtie/Ensembl_transposon_set/Ensembl_transposon_set +piRNA_clusters /home/galaxy/galaxy-dist/bowtie/piRNA_clusters/piRNA_clusters +dme_miR_r18 /home/galaxy/galaxy-dist/bowtie/dme_miR_r18/dme_miR_r18 +dme_miR_r20 /home/galaxy/galaxy-dist/bowtie/dme_miR_r20/dme_miR_r20 +mmus_miR_r19 /home/galaxy/galaxy-dist/bowtie/mmus_miR_r19/mmus_miR_r19 +mmus_miR_r20 /home/galaxy/galaxy-dist/bowtie/mmus_miR_r20/mmus_miR_r20 +hs_miR_r18 /home/galaxy/galaxy-dist/bowtie/hs_miR_r18/hs_miR_r18 +PlacW /home/galaxy/galaxy-dist/bowtie/PlacW/PlacW +#PlacZ_common /home/galaxy/galaxy-dist/bowtie/PlacZ_common/PlacZ_common +#P1152 /home/galaxy/galaxy-dist/bowtie/P1152/P1152 +P1152 /home/galaxy/galaxy-dist/bowtie/complete_P1152/complete_P1152 +P-element /home/galaxy/galaxy-dist/bowtie/P-element/P-element +esi1_esi2 /home/galaxy/galaxy-dist/bowtie/esi1_esi2/esi1_esi2 +EGFP /home/galaxy/galaxy-dist/bowtie/EGFP/EGFP +TasB /home/galaxy/galaxy-dist/bowtie/TasB/TasB +TAS2R /home/galaxy/galaxy-dist/bowtie/TAS2R/TAS2R +TAS3R /home/galaxy/galaxy-dist/bowtie/TAS3R/TAS3R +mm9 /home/galaxy/galaxy-dist/bowtie/mm9/mm9 +42AB /home/galaxy/galaxy-dist/bowtie/42AB/42AB +flamenco /home/galaxy/galaxy-dist/bowtie/flamenco/flamenco +insect_viruses /home/galaxy/galaxy-dist/bowtie/insect_viruses/viruses +#David_mmus_r19 /home/galaxy/galaxy-dist/bowtie/David_mmus_r19/David_mmus_r19 +Onyong /home/galaxy/galaxy-dist/bowtie/Onyong/Onyong +A.gambiae_redundant /home/galaxy/galaxy-dist/bowtie/AgamP3.17/AgamP3.17 +A.gambiae_masked /home/galaxy/galaxy-dist/bowtie/Agam_Pest3/Agam_Pest3 +Agam_all-cDNAs /home/galaxy/galaxy-dist/bowtie/AgamP3.17_all-transcripts/AgamP3.17_all-transcripts +AgamP3.17_all_stranded_genes /home/galaxy/galaxy-dist/bowtie/AgamP3.17_all_stranded_genes/AgamP3.17_all_stranded_genes +Agam_ribosomal /home/galaxy/galaxy-dist/bowtie/Agam_ribosomal/Agam_ribosomal +Agam_miR_r19 /home/galaxy/galaxy-dist/bowtie/aga_miR_r19/aga_miR_r19 +AgamP3.17_miscRNA-rRNA-snoRNA-snRNA-tRNA /home/galaxy/galaxy-dist/bowtie/AgamP3.17_miscRNA-rRNA-snoRNA-snRNA-tRNA/AgamP3.17_miscRNA-rRNA-snoRNA-snRNA-tRNA +AgamP3.17_RepeatMasker /home/galaxy/galaxy-dist/bowtie/AgamP3.17_RepeatMasker/AgamP3.17_RepeatMasker