comparison signature.py @ 11:b1a15b5a3f1b draft

planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_signature commit 062e78aef14c4655d1b32d5f29ca543a50389b08

10:d5106e27df0e

#!/usr/bin/python
# script for computing overlap signatures from a bowtie output
# Christophe Antoniewski <[e-mail]>
# Usage signature.py <1:input> <2:format of input> <3:minsize query> <4:maxsize query> <5:minsize target> <6:maxsize target>
#			  <7:minscope> <8:maxscope> <9:output> <10:bowtie index> <11:procedure option> <12: graph (global or lattice)>
# 			  <13: R code>
# version 2.0.0

import sys
import subprocess
import argparse
from smRtools import *
from collections import defaultdict  # test whether it is required


def Parser():
    the_parser = argparse.ArgumentParser()
    the_parser.add_argument(

11:b1a15b5a3f1b

#!/usr/bin/python
# script for computing overlap signatures from a bowtie output
# Christophe Antoniewski <[e-mail]>
# Usage signature.py <1:input> <2:format of input> <3:minsize query> <4:maxsize query> <5:minsize target> <6:maxsize target>
# <7:minscope> <8:maxscope> <9:output> <10:bowtie index> <11:procedure option> <12: graph (global or lattice)>
# <13: R code>
# version 2.0.0

import subprocess
import argparse
from smRtools import HandleSmRNAwindows


def Parser():
    the_parser = argparse.ArgumentParser()
    the_parser.add_argument(