# HG changeset patch
# User drosofff
# Date 1448556939 18000
# Node ID 9784e5046f042deaa139b8f9c292f17a877bf923
# Parent  0f7cf7fb3465996fe46686a95803257191d37f5e
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 450d1b3d954cc7d96e53652d468811546951f995

diff -r 0f7cf7fb3465 -r 9784e5046f04 readmap.xml
--- a/readmap.xml	Wed Oct 21 11:12:45 2015 -0400
+++ b/readmap.xml	Thu Nov 26 11:55:39 2015 -0500
@@ -1,4 +1,4 @@
-<tool id="Readmap" name="Generate readmap and histograms from alignment files" version="1.0.4">
+<tool id="Readmap" name="Generate readmap and histograms from alignment files" version="1.0.5">
   <description>from sRbowtie aligment</description>
   <requirements>
         <requirement type="package" version="0.12.7">bowtie</requirement>
@@ -157,8 +157,10 @@
       ## GRAPHS
 
       if (n_genes > 7) {page_height_simple = 11.69; page_height_combi=11.69; rows_per_page=${rows_per_page}; extrarow=0 } else {
-                         rows_per_page= n_genes; page_height_simple = 11.69/n_genes/4; page_height_combi=11.69/(n_genes*2); extrarow=1 }
-      if (n_samples > 4) {page_width = 8.2677*n_samples/4} else {page_width = 8.2677*n_samples/3} # to test
+                         rows_per_page= 8; page_height_simple = 11.69; page_height_combi=11.69; extrarow=0 }
+                         ## rows_per_page= 8; page_height_simple = 11.69/7*n_genes; page_height_combi=11.69/9*(n_genes*2); extrarow=0 }
+                         ## rows_per_page= n_genes; page_height_simple = 11.69/n_genes/4; page_height_combi=11.69/(n_genes*2); extrarow=1 }
+     if (n_samples > 4) {page_width = 8.2677*n_samples/4} else {page_width = 8.2677*n_samples/3} # to test
 
       pdf(file="${readmap_PDF}", paper="special", height=page_height_simple, width=page_width)
       for (i in seq(1,n_genes,rows_per_page)) {
diff -r 0f7cf7fb3465 -r 9784e5046f04 smRtools.pyc
Binary file smRtools.pyc has changed
diff -r 0f7cf7fb3465 -r 9784e5046f04 tool_dependencies.xml
--- a/tool_dependencies.xml	Wed Oct 21 11:12:45 2015 -0400
+++ b/tool_dependencies.xml	Thu Nov 26 11:55:39 2015 -0500
@@ -7,7 +7,7 @@
       <repository changeset_revision="ca10c522f37e" name="package_pysam_0_7_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="numpy" version="1.9">
-        <repository changeset_revision="816d3480b0b1" name="package_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="f9289486f06d" name="package_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="R" version="3.1.2">
         <repository changeset_revision="41f43a2064ba" name="package_r_3_1_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />