# HG changeset patch
# User drosofff
# Date 1498520273 14400
# Node ID 0806b5d0b5da2c65ddc29697f4d784ea05e48ba1
# Parent  57b6452f9d76fca8aa1bb8a7f9348b702dac58d4
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_bowtie commit 9f17bd7ad141b24f5bb3c041a059afa1c268b68f

diff -r 57b6452f9d76 -r 0806b5d0b5da sRbowtie.xml
--- a/sRbowtie.xml	Mon Jun 26 17:36:41 2017 -0400
+++ b/sRbowtie.xml	Mon Jun 26 19:37:53 2017 -0400
@@ -46,7 +46,7 @@
 
         ## run the bowtie alignement
         #if $output_format == "tabular":
-            bowtie -p \${GALAXY_SLOTS:-4} $method_prefix  --suppress 6,7,8 $extra_output$"local_index" $format $input > $output
+            bowtie -p \${GALAXY_SLOTS:-4} $method_prefix  --suppress 6,7,8 $extra_output "local_index" $format $input > $output
         #elif $output_format == "sam":
             bowtie -p \${GALAXY_SLOTS:-4} $method_prefix $extra_output -S "local_index" $format $input > $output
         #elif $output_format == "bam":