Mercurial > repos > drosofff > mir_parser

comparison MirParser.xml @ 2:c68bfbff72d5 draft

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planemo upload for repository https://bitbucket.org/drosofff/gedtools/
author drosofff
date Thu, 13 Aug 2015 10:23:43 -0400
parents 035df35a257e
children bf31563d22a1
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1:101fec3cba04 2:c68bfbff72d5
1 <tool id="MirParser" name="Parse miRNAs" version="0.9.2"> 1 <tool id="MirParser" name="Parse miRNAs" version="0.9.2">
2 <description>from sRbowtie aligment</description> 2 <description>from aligment files</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="0.12.7">bowtie</requirement> 4 <requirement type="package" version="0.12.7">bowtie</requirement>
5 <requirement type="package" version="0.7.7">pysam</requirement> 5 <requirement type="package" version="0.7.7">pysam</requirement>
6 <requirement type="package" version="1.9">numpy</requirement> 6 <requirement type="package" version="1.9">numpy</requirement>
7 <requirement type="package" version="2.14">biocbasics</requirement> 7 <requirement type="package" version="2.14">biocbasics</requirement>
8 <requirement type="package" version="1.2">samtools</requirement>
8 </requirements> 9 </requirements>
9 <command interpreter="python"> 10 <command interpreter="python">
10 MirParser.py 11 MirParser.py
11 #if $refGenomeSource.genomeSource == "history": 12 #if $refGenomeSource.genomeSource == "history":
12 $refGenomeSource.ownFile ## index source sys.arg[1] 13 $refGenomeSource.ownFile ## index source sys.arg[1]