Mercurial > repos > drosofff > annotation_collector

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planemo upload for repository https://bitbucket.org/drosofff/gedtools/
author drosofff
date Mon, 29 Jun 2015 03:39:57 -0400
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800bbe50ad70 planemo upload for repository https://bitbucket.org/drosofff/gedtools/
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1 #!/usr/bin/env python
800bbe50ad70 planemo upload for repository https://bitbucket.org/drosofff/gedtools/
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2 #By, drosofff@gmail.com
800bbe50ad70 planemo upload for repository https://bitbucket.org/drosofff/gedtools/
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3 # command: annotation_collector.py $output input1, label1, input2, label2, etc...
800bbe50ad70 planemo upload for repository https://bitbucket.org/drosofff/gedtools/
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4
800bbe50ad70 planemo upload for repository https://bitbucket.org/drosofff/gedtools/
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5 import sys, os
800bbe50ad70 planemo upload for repository https://bitbucket.org/drosofff/gedtools/
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6
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7 def countlineinfile(file):
800bbe50ad70 planemo upload for repository https://bitbucket.org/drosofff/gedtools/
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8 F = open (file, "r")
800bbe50ad70 planemo upload for repository https://bitbucket.org/drosofff/gedtools/
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9 count = 0
800bbe50ad70 planemo upload for repository https://bitbucket.org/drosofff/gedtools/
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10 for line in F:
800bbe50ad70 planemo upload for repository https://bitbucket.org/drosofff/gedtools/
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11 count += 1
800bbe50ad70 planemo upload for repository https://bitbucket.org/drosofff/gedtools/
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12 F.close()
800bbe50ad70 planemo upload for repository https://bitbucket.org/drosofff/gedtools/
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13 return count/2
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14 results = []
800bbe50ad70 planemo upload for repository https://bitbucket.org/drosofff/gedtools/
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15
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16 for file, label in zip (sys.argv[2:-1:2], sys.argv[3:-1:2]):
800bbe50ad70 planemo upload for repository https://bitbucket.org/drosofff/gedtools/
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17 results.append ( (countlineinfile(file), label) )
800bbe50ad70 planemo upload for repository https://bitbucket.org/drosofff/gedtools/
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18
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19 Fout = open (sys.argv[1], "w")
800bbe50ad70 planemo upload for repository https://bitbucket.org/drosofff/gedtools/
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20
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21 print >> Fout, "# %s" % (sys.argv[-1])
800bbe50ad70 planemo upload for repository https://bitbucket.org/drosofff/gedtools/
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22 for filecount, label in results:
800bbe50ad70 planemo upload for repository https://bitbucket.org/drosofff/gedtools/
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23 print >> Fout, "%s\t%s\t%.2f %%" % (label, filecount, filecount/float(results[0][0])*100 )
800bbe50ad70 planemo upload for repository https://bitbucket.org/drosofff/gedtools/
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24 print >> Fout
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25 Fout.close()