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Hopefully the final update
author dpryan79
date Tue, 18 Apr 2017 16:16:55 -0400
parents ccf3e976e367
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2 System Requirements 2 System Requirements
3 =================== 3 ===================
4 4
5 - **Memory**: To run efficiently, RNA-STAR requires enough free memory to 5 - **Memory**: To run efficiently, RNA-STAR requires enough free memory to
6 hold the SA-indexed reference genome in RAM. For Human Genome hg19 this is 6 hold the SA-indexed reference genome in RAM. For Human Genome hg19 this
7 index about 27GB and running RNA-STAR requires approximately ~30GB of RAM. 7 index is about 27GB and running RNA-STAR requires approximately ~30GB of RAM.
8 For custom genomes the rule of thub is to multiply the size of the 8 For custom genomes, the rule of thub is to multiply the size of the
9 reference FASTA file with 9 to get the estimated required amount of RAM. 9 reference FASTA file by 9 to estimated required amount of RAM.