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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="numpy" version="1.9">
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4 <repository changeset_revision="3f5ed97e31de" name="package_python_2_7_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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5 </package>
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6 <package name="pybigwig" version="0.2.5">
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7 <repository changeset_revision="db3a4747319c" name="package_python_2_7_10_pybigwig_0_2_5" owner="dpryan79" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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8 </package>
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9 <package name="matplotlib" version="1.4">
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10 <repository changeset_revision="9a4214646e88" name="package_python_2_7_matplotlib_1_4" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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11 </package>
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12 <package name="scipy" version="0.14">
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13 <repository changeset_revision="1481a40ab1d1" name="package_python_2_7_scipy_0_14" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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14 </package>
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15 <package name="pysam" version="0.8.3">
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16 <repository changeset_revision="7ac80143c68d" name="package_python_2_7_pysam_0_8_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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17 </package>
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18 <package name="bx-python" version="0.7.2">
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19 <repository changeset_revision="d8a6fe09ae80" name="package_python_2_7_bx_python_0_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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20 </package>
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21 <package name="python" version="2.7.10">
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22 <repository changeset_revision="a28e3c30828d" name="package_python_2_7_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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23 </package>
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1
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24 <package name="deepTools" version="2.1.0">
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0
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25 <install version="1.0">
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26 <actions>
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27 <action type="setup_python_environment">
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28 <repository changeset_revision="a28e3c30828d" name="package_python_2_7_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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29 <package name="python" version="2.7.10" />
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30 </repository>
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31 <repository changeset_revision="7ac80143c68d" name="package_python_2_7_pysam_0_8_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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32 <package name="pysam" version="0.8.3" />
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33 </repository>
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34 <repository changeset_revision="3f5ed97e31de" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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35 <package name="numpy" version="1.9" />
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36 </repository>
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37 <repository changeset_revision="9a4214646e88" name="package_python_2_7_matplotlib_1_4" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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38 <package name="matplotlib" version="1.4" />
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39 </repository>
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40 <repository changeset_revision="1481a40ab1d1" name="package_python_2_7_scipy_0_14" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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41 <package name="scipy" version="0.14" />
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42 </repository>
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43 <repository changeset_revision="d8a6fe09ae80" name="package_python_2_7_bx_python_0_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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44 <package name="bx-python" version="0.7.2" />
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45 </repository>
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46 <repository changeset_revision="db3a4747319c" name="package_python_2_7_10_pybigwig_0_2_5" owner="dpryan79" toolshed="https://testtoolshed.g2.bx.psu.edu">
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47 <package name="pybigwig" version="0.2.5" />
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48 </repository>
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49 <package sha256sum="3bf835afde02cd5247198db3e01f690899e1fdb86e1821a83ac940d807baa857">https://pypi.python.org/packages/source/d/deepTools/deepTools-2.1.0.tar.gz</package>
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50 </action>
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51
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52 <action type="set_environment">
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53 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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54 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
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55 <environment_variable action="set_to" name="DEEPTOOLS_ROOT_PATH">$INSTALL_DIR</environment_variable>
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56 <environment_variable action="set_to" name="DEEPTOOLS_PYTHONPATH">$INSTALL_DIR</environment_variable>
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57 <environment_variable action="set_to" name="DEEPTOOLS_PATH">$INSTALL_DIR/bin</environment_variable>
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58 <!-- libpng lib path -->
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59 <environment_variable action="set_to" name="LIBPNG_LIB_PATH">$ENV[LIBPNG_LIB_PATH]</environment_variable>
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60 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[LIBPNG_LIB_PATH]</environment_variable>
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61 <!-- disable the config file of deepTools -->
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62 <environment_variable action="set_to" name="DEEP_TOOLS_NO_CONFIG">TRUE</environment_variable>
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63 </action>
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64 </actions>
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65 </install>
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66 <readme>
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67 Installation of deepTools from Fidel Ramirez.
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68 https://github.com/fidelram/deepTools
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69 </readme>
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70 </package>
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71 </tool_dependency>
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