# HG changeset patch
# User dpryan79
# Date 1473767571 14400
# Node ID 18776a266ed9f8fabed41dcd5917cd86211eba8d
# Parent  cbb49b5bc43fdde9b2ab8b0b55d763ef49f9db32
Uploaded

diff -r cbb49b5bc43f -r 18776a266ed9 tool_dependencies.xml
--- a/tool_dependencies.xml	Tue Sep 13 07:21:38 2016 -0400
+++ b/tool_dependencies.xml	Tue Sep 13 07:52:51 2016 -0400
@@ -18,7 +18,7 @@
                     </repository>
                 </action>
                 <action type="shell_command">git clone https://github.com/brentp/bwa-meth</action>
-                <action type="shell_command">git reset --hard 7dfec747105b9fa2cf1678bf5f67e860a0155d0e</action>
+                <action type="shell_command">cd bwa-meth &amp;&amp; git reset --hard 7dfec747105b9fa2cf1678bf5f67e860a0155d0e</action>
                 <action type="set_environment">
                     <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                     <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>