Mercurial > repos > dpryan79 > package_python_2_7_bwameth_0_20

view tool_dependencies.xml @ 4:44d16fcc7347 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author dpryan79
date Wed, 14 Sep 2016 08:09:44 -0400
parents 435f9d24c060
children
line wrap: on
line source

<?xml version="1.0"?>
<tool_dependency>
    <package name="python" version="2.7.10">
        <repository changeset_revision="a28e3c30828d" name="package_python_2_7_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="bwa" version="0.7.12">
       <repository changeset_revision="67aa12c8d449" name="package_bwa_0_7_12" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="samtools" version="1.2">
       <repository changeset_revision="5b7172f9b230" name="package_samtools_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="toolshed" version="0.4.6">
       <repository changeset_revision="c0ca6d5a5c5c" name="package_python_2_7_toolshed_0_4_6" owner="dpryan79" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="bwameth" version="0.20">
        <install version="1.0">
            <actions>
                <action type="setup_python_environment">
                    <repository changeset_revision="a28e3c30828d" name="package_python_2_7_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                        <package name="python" version="2.7.10" />
                    </repository>
                    <repository changeset_revision="c0ca6d5a5c5c" name="package_python_2_7_toolshed_0_4_6" owner="dpryan79" toolshed="https://testtoolshed.g2.bx.psu.edu">
                        <package name="toolshed" version="0.4.6" />
                    </repository>
                    <package md5sum="7d6e2ed375da0fc3d44de3477aa5c087">https://github.com/brentp/bwa-meth/archive/v0.2.0.tar.gz</package>
                </action>
                <action type="set_environment">
                    <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                </action>
             </actions>
         </install>
         <readme>
            Installation of toolshed from Brent Pedersen
            https://github.com/brentp/toolshed
         </readme>
     </package>
</tool_dependency>