Mercurial > repos > dpryan79 > package_python_2_7_bwameth_0_20
comparison tool_dependencies.xml @ 2:831f8397a424 draft
Uploaded
| author | dpryan79 |
|---|---|
| date | Tue, 13 Sep 2016 08:00:06 -0400 |
| parents | 18776a266ed9 |
| children | 435f9d24c060 |
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| 1:18776a266ed9 | 2:831f8397a424 |
|---|---|
| 15 <action type="setup_python_environment"> | 15 <action type="setup_python_environment"> |
| 16 <repository changeset_revision="a28e3c30828d" name="package_python_2_7_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> | 16 <repository changeset_revision="a28e3c30828d" name="package_python_2_7_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> |
| 17 <package name="python" version="2.7.10" /> | 17 <package name="python" version="2.7.10" /> |
| 18 </repository> | 18 </repository> |
| 19 </action> | 19 </action> |
| 20 <action type="shell_command">git clone https://github.com/brentp/bwa-meth</action> | |
| 21 <action type="shell_command">cd bwa-meth && git reset --hard 7dfec747105b9fa2cf1678bf5f67e860a0155d0e</action> | |
| 22 <action type="set_environment"> | 20 <action type="set_environment"> |
| 23 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> | 21 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> |
| 24 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable> | 22 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable> |
| 25 </action> | 23 </action> |
| 26 <action type="make_directory">$INSTALL_DIR/lib/python</action> | 24 <action type="make_directory">$INSTALL_DIR/lib/python</action> |
| 27 <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python && python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin</action> | 25 <action type="shell_command">git clone https://github.com/brentp/bwa-meth && cd bwa-meth && git reset --hard 7dfec747105b9fa2cf1678bf5f67e860a0155d0e && python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin</action> |
| 28 </actions> | 26 </actions> |
| 29 </install> | 27 </install> |
| 30 <readme> | 28 <readme> |
| 31 Installation of bwa-meth from Brent Pedersen | 29 Installation of bwa-meth from Brent Pedersen |
| 32 https://github.com/brentp/bwa-meth | 30 https://github.com/brentp/bwa-meth |