|
0
|
1 <?xml version="1.0"?>
|
|
|
2 <data_managers>
|
|
|
3 <data_manager tool_file="data_manager/rna_star_index_builder.xml" id="rna_star_index_builder" version="0.0.3">
|
|
|
4 <data_table name="rnastar_index2">
|
|
|
5 <output>
|
|
|
6 <column name="value" />
|
|
|
7 <column name="dbkey" />
|
|
|
8 <column name="name" />
|
|
|
9 <column name="path" output_ref="out_file" >
|
|
|
10 <move type="directory" relativize_symlinks="True">
|
|
|
11 <!-- <source>${path}</source>
|
|
|
12 out_file.extra_files_path is used as base by default
|
|
|
13 if no source, eg for type=directory, then refers to base
|
|
|
14 -->
|
|
|
15 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/rnastar_index2/${value}</target>
|
|
|
16 </move>
|
|
|
17 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/rnastar_index2/${value}/${path}</value_translation>
|
|
|
18 <value_translation type="function">abspath</value_translation>
|
|
|
19 </column>
|
|
|
20 <column name="withGTF" />
|
|
|
21 </output>
|
|
|
22 </data_table>
|
|
|
23 </data_manager>
|
|
|
24 </data_managers>
|
